Sequence Alignment

Align the DNA, RNA and amino acid sequences

SimpleBio.nalign — Function

nalign(type::Int64, s1::String, s2::String)

Alignment of nucleotides (DNA or RNA) by default gapopen = -5, gapextend = -1 (see BioAlignments.jl for details.). parameter for type of sequence 1 => DNA 2 => RNA

source

nalign(type::Int64, s1::String, s2::String, g_o::Int64, g_e::Int64)

Alignment of nucleotides (DNA or RNA) with type-in gapopen and gapextend values. (see BioAlignments.jl for details.)

source

SimpleBio.aalign — Function

aalign(s1::String, s2::String)

Alignment of amino acid by default gapopen = -5, gapextend = -1 (see BioAlignments.jl for details.)

source

aalign(s1::String, s2::String, g_o::Int64, g_e::Int64)

Alignment of nucleotides (DNA or RNA) with type-in gapopen and gapextend values. (see BioAlignments.jl for details.)

source